Atomic force microscopy In AFM imaging, specimens are deposited on an atomically flat surface, usually mica, in liquid or ambient pressure gas environments. The surface is then scanned with a sharp tip to acquire its height profile. AFM imaging has been extremely informative in our understanding of many DNA-protein complex interactions by allowing quantification of DNA bending effects and visualization of protein-induced DNA compaction or supercoiling.
The figure above represents AFM instrumentation, principle of operation and image of CI-mediated DNA loop. Scale bar = 100nm
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